GIGA 2021 Annual Report 67 SELECTED PUBLICATIONS Wobble tRNA modification and hydrophilicamino acid patterns dictate protein fate. Rapino F, Zhou Z, Roncero Sanchez AM, Joiret M, Seca C, El Hachem N, Valenti G, Latini S, Shostak K, Geris L, Li P, Huang G, Mazzucchelli G, Baiwir D, Desmet CJ, Chariot A, Georges M, Close P. Nat Commun. 2021 Apr 15;12(1):2170. PCIP-seq: simultaneous sequencing of integrated viral genomes and their insertion sites with long reads. Artesi M, Hahaut V, Cole B, Lambrechts L, Ashrafi F, Marçais A, Hermine O, Griebel P, Arsic N, van der Meer F, Burny A, Bron D, Bianchi E, Delvenne P, Bours V, Charlier C, Georges M, Vandekerckhove L, Van den Broeke A, Durkin K. Genome Biol. 2021 Apr 6;22(1):97. ERG transcription factors have a splicing regulatory function involving RBFOX2 that is altered in the EWS-FLI1 oncogenic fusion. Saulnier O, Guedri-Idjouadiene K, Aynaud MM, Chakraborty A, Bruyr J, Pineau J, O’Grady T, Mirabeau O, Grossetête S, Galvan B, Claes M, Al Oula Hassoun Z, Sadacca B, Laud K, Zaïdi S, Surdez D, Baulande S, Rambout X, Tirode F, Dutertre M, Delattre O, Dequiedt F. Nucleic Acids Res. 2021 May 21;49(9):5038-5056. Identification of tissue-specific and common methylation quantitative trait loci in healthy individuals using MAGAR. Scherer M, Gasparoni G, Rahmouni S, Shashkova T, Arnoux M, Louis E, Nostaeva A, Avalos D, Dermitzakis ET, Aulchenko YS, Lengauer T, Lyons PA, Georges M, Walter J. Epigenetics Chromatin. 2021 Sep 16;14(1):44. Alzheimer’s disease genetic risk and sleep phenotypes in healthy young men: association with more slow waves and daytime sleepiness. Muto V, Koshmanova E, Ghaemmaghami P, Jaspar M, Meyer C, Elansary M, Van Egroo M, Chylinski D, Berthomier C, Brandewinder M, Mouraux C, Schmidt C, Hammad G, Coppieters W, Ahariz N, Degueldre C, Luxen A, Salmon E, Phillips C, Archer SN, Yengo L, Byrne E, Collette F, Georges M, Dijk DJ, Maquet P, Visscher PM, Vandewalle G. Sleep. 2021 Jan 21;44(1):zsaa137. Collab 2 EUROGENOMICS High throughput array genotyping in is one of the important activities of the genomics core facility. With the dropping cost of NGS, shallow whole genome sequencing or targeted sequencing is more and more exploited as an alternative (genotype by sequencing or GBS). Since many years, array genotyping is applied in cattle breeding for selection. For an European cattle-breeding consortium, Eurogenomics, a pilot experiment, using targeted NGS was organized in order to evaluate the usefulness of alternatives to array genotyping.
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